applet here
MAIZE GENE FINDER (ver 1.01)
Locates most likely open reading frames in genomic DNA sequence.
(Optimized for
Zea mays
).
last update: 18/7/00.
Please read
about this program
before using.
Password:
Paste sequence below:
(Numbers and spaces permitted, NO descriptive text!)
Which strand to analyze:
as submitted
inverse complement
Sequence name:
Program Parameters:
I) Process sequence using:
i) All ATGs.
ii) Only ATGs in 5' 1000 nt.
iii) Only top-ranking ATGs 3' of nt 1000.
If choice iii, select number of top-ranking ATGs to use:
10
25
50
100
II) Select the mode of operation:
a) Attempt to identify all the ORFs.
b) Identify ATGs generating ORFs > cutoff (see below).
c) Identify the best ORFs generated by a single ATG (see below).
If choice b, enter cutoff value (minimum ORF length in nt):
If choice c, enter position of ATG:
Other:
Number of ORFs to save:
Number of ends to save:
Comments or suggestions?
