ASSEMBLER -
ADVANCED
(ver 1.00)
Aligns overlapping nucleic acid "reads" and attempts to extract a consensus sequence.
last modified 14/1/00
Please note:
Sequence names are mandatory and will be truncated to 7 letters for output.
Sequences must consist of only the letters A, C, G, T, U and N.
Read About Assembler
Change Program Parameters
Project Name:
Enter (or paste) current consensus sequence (optional):
Name of partial sequence #1:
Partial sequence #1:
Name of partial sequence #2:
Partial sequence #2:
Name of partial sequence #3:
Partial sequence #3:
Name of partial sequence #4:
Partial sequence #4:
Name of partial sequence #5:
Partial sequence #5:
Name of partial sequence #6:
Partial sequence #6:
Name of partial sequence #7:
Partial sequence #7:
Name of partial sequence #8:
Partial sequence #8:
Name of partial sequence #9:
Partial sequence #9:
Name of partial sequence #10:
Partial sequence #10:
Name of partial sequence #11:
Partial sequence #11:
Name of partial sequence #12:
Partial sequence #12:
Name of partial sequence #13:
Partial sequence #13:
Name of partial sequence #14:
Partial sequence #14:
Name of partial sequence #15:
Partial sequence #15:
Name of partial sequence #16:
Partial sequence #16:
Name of partial sequence #17:
Partial sequence #17:
Name of partial sequence #18:
Partial sequence #18:
Name of partial sequence #19:
Partial sequence #19:
Name of partial sequence #20:
Partial sequence #20:
Name of partial sequence #21:
Partial sequence #21:
Name of partial sequence #22:
Partial sequence #22:
Name of partial sequence #23:
Partial sequence #23:
Name of partial sequence #24:
Partial sequence #24:
Name of partial sequence #25:
Partial sequence #25:
Parameters
Read About Assembler
BITE SIZE (length of subsequences compared):
BITE NUMBER (number of bites required for alignment) :
LINE LENGTH (number of nt shown per line of output):
Code letters appear in the consensus sequence produced by this program. The user may alter the use of these code letters by changing the default cutoff values:
CUTOFF 1 (frequency required to output a single base) :
CUTOFF 2 (frequency required to output code for 2 bases):
CUTOFF 3 (frequency required to output code for 3 bases):